PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G148600.1
Common NamePHAVU_005G148600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 337aa    MW: 37840.6 Da    PI: 8.0093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G148600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05169188120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Phvul.005G148600.1 169 FSCPLCFKTFNRYNNMQMHM 188
                         89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66169196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5169188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-5235273No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4240273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTHPYCSNDF NAWFDLNSPF IFSSSSSPCS NNPPFYFPST YHHHNFPSGI SFTPHQSSPP  60
KEALPLLNLS PARGEDLESC FSVMKVNKEK EIELSMLSSN NSSLDDDETV TVALHLGLPS  120
TTTSSDLTSN TCSDKEKATV GSEYSPTRIN KGQYWIPTPA QILIGPTQFS CPLCFKTFNR  180
YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA GCKNNIDHPR AKPLKDFRTL  240
QTHYKRKHGI KPFMCRKCCK AFAVRGDWRT HEKNCGKLWY CSCGSDFKHK RSLKDHIKAF  300
GNGHKAYGID CLDQDDEPGS EIEQESVNES LVSIHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971400.0BT097140.1 Soybean clone JCVI-FLGm-21L15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150382.10.0hypothetical protein PHAVU_005G148600g
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV7C0F20.0V7C0F2_PHAVU; Uncharacterized protein
STRINGGLYMA15G03830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein